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Table 1 Respiratory pathogen colonization in people with cystic fibrosis bronchiectasis versus non-cystic fibrosis bronchiectasis

From: Comparison of respiratory pathogen colonization and antimicrobial susceptibility in people with cystic fibrosis bronchiectasis versus non-cystic fibrosis bronchiectasis: a protocol for a systematic review

Data extracted by

Reference

Author & year

 

Citation

 

Country/countries

 

Institution/s

 

Study design

 

Clinical/microbiology study

 

 • Observational study

 

 • Clinical trial

 

 • Case series with > 10 cases

 

 • Case series with < 9 case

 

Time period

Participants

• CF bronchiectasis

 

• Non-CF bronchiectasis

 

• Mixed

 

• Other

 

Study group (CF bronchiectasis)

No.

 

Age

 

• Adults > 18 years

 

• Children < 18 years

 

• Mixed (not possible to separate)

 

Sex

 

Respiratory pathogens

No. (%)

Staphylococcus aureus (MSSA)

 

Staphylococcus aureus (MRSA)

 

Pseudomonas aeruginosa

 

Burkholderia 20 epacian complex

 

Haemophilus influenzae

 

Stenotrophomonas maltophilia

 

Achromobacter xylosoxidans

 

NTM

 

Streptococcus

 

Veillonella

 

Prevotella

 

Others

 

Inclusion/Exclusion criteria

 

Sample type (sputum/BAL/ELF)

 

Upper respiratory specimen

 

• Nasal specimen

 

• Nasopharyngeal specimen

 

• Oropharyngeal specimen

 

• Other

 

Lower respiratory specimen

 

• Sputum

 

• Induced sputum

 

• BAL

 

• Lung aspirate

 

• Other

 

Antibiotic therapy

 

• Already on antibiotic(s)

 

• Not on antibiotic(s)

 

• Unclear

 

Method of identifying species

 

• Culture

 

• PCR

 

• Other

 

Antimicrobial resistance

 

Yes/No

 

Comparison group (non-CF bronchiectasis)

Cause of non-CF bronchiectasis/diagnosis

 

No.

 

Age

 

Adults > 18 years

 

Children < 18 years

 

Mixed (not possible to separate)

 

Sex

 

Respiratory pathogens

No. (%)

Haemophilus influenzae

 

Pseudomonas aeruginosa

 

Moraxella catarrhalis

 

NTM

 

Staphylococcus aureus

 

Streptococcus

 

Veillonella

 

Prevotella

 

Others

 

Inclusion/exclusion criteria

 

Sample type (sputum/BAL/ELF)

 

Upper respiratory specimen

 

• Nasal specimen

 

• Nasopharyngeal specimen

 

• Oropharyngeal specimen

 

• Other

 

Lower respiratory specimen

 

• Sputum

 

• Induced sputum

 

• BAL

 

• Lung aspirate

 

• Other

 

Antibiotic therapy

 

• Already on antibiotic(s)

 

• Not on antibiotic(s)

 

• Unclear

 

Method of identifying species

 

• Culture

 

• PCR

 

• Other

 

Clinical state

 

• Acute pulmonary exacerbation

 

• Surveillance culture

 

Antimicrobial resistance

 

Yes/No

 

Remarks